rtCloud
latest
Contents:
Overview
Realtime fMRI Cloud Framework
Quickstart Demo: sample project via Docker
RTCloud Installation & Usage
“Replaying” an OpenNeuro dataset
Sharing your RT-Cloud pipeline as a Docker image
Other Links
Troubleshooting / Common errors
Running a Realtime Experiment
Making your project cloud enabled
Providing Feedback to Subjects
Using the BIDS Data Standard with RT-Cloud
Run Project in a Docker Container
VM
MRI control
presenter
psychopy
API Reference
rtCloud
Index
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Index
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W
_
__del__() (rtCommon.dataInterface.DataInterface method)
(rtCommon.fileWatcher.FileWatcher method)
(rtCommon.fileWatcher.InotifyFileWatcher method)
(rtCommon.fileWatcher.WatchdogFileWatcher method)
__delattr__() (rtCommon.structDict.StructDict method)
__eq__() (rtCommon.bidsIncremental.BidsIncremental method)
(rtCommon.bidsRun.BidsRun method)
__getattr__() (rtCommon.bidsArchive.BidsArchive method)
(rtCommon.remoteable.RemoteStub method)
(rtCommon.structDict.MatlabStructDict method)
(rtCommon.structDict.StructDict method)
__getattribute__() (rtCommon.clientInterface.WrapRpycObject method)
(rtCommon.remoteable.RemoteableExtensible method)
__getstate__() (rtCommon.bidsIncremental.BidsIncremental method)
(rtCommon.structDict.StructDict method)
__setattr__() (rtCommon.structDict.MatlabStructDict method)
(rtCommon.structDict.StructDict method)
__setstate__() (rtCommon.bidsIncremental.BidsIncremental method)
(rtCommon.structDict.StructDict method)
__str__() (rtCommon.bidsArchive.BidsArchive method)
(rtCommon.bidsIncremental.BidsIncremental method)
_addImage() (rtCommon.bidsArchive.BidsArchive method)
_addMetadata() (rtCommon.bidsArchive.BidsArchive method)
_addResultValue() (rtCommon.webDisplayInterface.WebDisplayInterface method)
_addScript() (rtCommon.webServer.WsBrowserRequestHandler method)
_appendIncremental() (rtCommon.bidsArchive.BidsArchive method)
_checkAllowedDirs() (rtCommon.dataInterface.DataInterface method)
_checkAllowedFileTypes() (rtCommon.dataInterface.DataInterface method)
_exceptIfMissingMetadata() (rtCommon.bidsIncremental.BidsIncremental method)
_exceptIfNotBids() (rtCommon.bidsIncremental.BidsIncremental method)
_filterFileList() (rtCommon.dataInterface.DataInterface method)
_getIncremental() (rtCommon.bidsArchive.BidsArchive method)
_imgMetadata (rtCommon.bidsIncremental.BidsIncremental attribute)
_postprocessMetadata() (rtCommon.bidsIncremental.BidsIncremental method)
_preprocessMetadata() (rtCommon.bidsIncremental.BidsIncremental method)
_runSession() (rtCommon.webServer.WsBrowserRequestHandler method)
_sendMessageToWeb() (rtCommon.webDisplayInterface.WebDisplayInterface method)
_setError() (rtCommon.webServer.WsBrowserRequestHandler method)
_stripLeadingSlash() (rtCommon.bidsArchive.BidsArchive static method)
_updateLayout() (rtCommon.bidsArchive.BidsArchive method)
_uploadFilesHandler() (rtCommon.webServer.WsBrowserRequestHandler method)
_wsBrowserCallback() (rtCommon.webServer.WsBrowserRequestHandler method)
A
absPathFromRelPath() (rtCommon.bidsArchive.BidsArchive method)
addHandlerClass() (rtCommon.wsRemoteService.WsRemoteService method)
addHandlerClassName() (rtCommon.wsRemoteService.WsRemoteService method)
addHandlers() (rtCommon.webServer.Web static method)
addLocalAttributes() (rtCommon.remoteable.RemoteableExtensible method)
addUserPassword() (in module rtCommon.addLogin)
adjustTimeUnits() (in module rtCommon.bidsCommon)
anonymizeDicom() (in module rtCommon.imageHandling)
app (rtCommon.webServer.Web attribute)
appendBidsRun() (rtCommon.bidsArchive.BidsArchive method)
appendIncremental() (rtCommon.bidsRun.BidsRun method)
areArraysClose() (in module rtCommon.validationUtils)
argParser (in module rtCommon.addLogin)
(in module rtCommon.projectServer)
asSingleIncremental() (rtCommon.bidsRun.BidsRun method)
attributesToAnonymize (in module rtCommon.imageHandling)
B
base_name (in module rtCommon.resample)
BaseWebSocketHandler (class in rtCommon.webSocketHandlers)
BIDS_DIR_PATH_PATTERN (in module rtCommon.bidsCommon)
BIDS_EVENT_COL_TO_DTYPE (in module rtCommon.bidsCommon)
BIDS_FILE_PATH_PATTERN (in module rtCommon.bidsCommon)
BIDS_FILE_PATTERN (in module rtCommon.bidsCommon)
BIDS_VERSION (in module rtCommon.bidsCommon)
BidsArchive (class in rtCommon.bidsArchive)
BidsAttributesToAnonymize (in module rtCommon.bidsCommon)
BidsEntityKeys (class in rtCommon.bidsCommon)
BidsFileExtension (class in rtCommon.bidsCommon)
BidsIncremental (class in rtCommon.bidsIncremental)
bidsIncrementalTimeToNextTr() (in module rtCommon.imageHandling)
BidsInterface (class in rtCommon.bidsInterface)
BidsRun (class in rtCommon.bidsRun)
BidsStream (class in rtCommon.bidsInterface)
binPath (in module rtCommon.imageHandling)
C
calcAvgRoundTripTime() (in module rtCommon.utils)
callback() (rtCommon.webSocketHandlers.RequestHandler method)
certsDir (in module rtCommon.certsUtils)
checkingDicomNiftiConversion() (in module rtCommon.checkDicomNiftiConversion)
checkRetry() (rtCommon.webHttpHandlers.LoginHandler method)
checkSSLCertAltName() (in module rtCommon.projectUtils)
clearAllPlots() (rtCommon.webDisplayInterface.WebDisplayInterface method)
clearRunPlot() (rtCommon.webDisplayInterface.WebDisplayInterface method)
ClientInterface (class in rtCommon.clientInterface)
close() (rtCommon.webServer.Web static method)
close_pending_requests() (rtCommon.projectServerRPC.RPCHandlers method)
(rtCommon.webSocketHandlers.RequestHandler method)
closeAllConnections() (in module rtCommon.webSocketHandlers)
closeStream() (rtCommon.bidsInterface.BidsInterface method)
CODE_TO_UNIT (in module rtCommon.bidsCommon)
commLock (rtCommon.wsRemoteService.WsRemoteService attribute)
CommonOutputDir (in module rtCommon.webServer)
compareArrays() (in module rtCommon.validationUtils)
compareMatFiles() (in module rtCommon.validationUtils)
compareMatStructs() (in module rtCommon.validationUtils)
connectionArgs (in module rtCommon.exampleService)
(in module rtCommon.openNeuroService)
(in module rtCommon.scannerDataService)
(in module rtCommon.subjectService)
convertDicomFileToNifti() (in module rtCommon.imageHandling)
convertDicomImgToNifti() (in module rtCommon.imageHandling)
convertStructuredArrayToDict() (in module rtCommon.structDict)
copy() (rtCommon.structDict.MatlabStructDict method)
(rtCommon.structDict.StructDict method)
copy_toplevel() (in module rtCommon.structDict)
copyFileWildcard() (in module rtCommon.utils)
correct3DHeaderTo4D() (in module rtCommon.bidsCommon)
correctEventsFileDatatypes() (in module rtCommon.bidsCommon)
createImageMetadataDict() (rtCommon.bidsIncremental.BidsIncremental static method)
currPath (in module rtCommon.addLogin)
(in module rtCommon.certsUtils)
(in module rtCommon.exampleService)
(in module rtCommon.openNeuroService)
(in module rtCommon.projectServer)
(in module rtCommon.scannerDataService)
(in module rtCommon.subjectService)
D
DataInterface (class in rtCommon.dataInterface)
dataPartSize (in module rtCommon.serialization)
dataRequest() (rtCommon.projectServerRPC.RPCHandlers method)
DATASET_DESC_REQ_FIELDS (in module rtCommon.bidsCommon)
DataWebSocketHandler (class in rtCommon.webSocketHandlers)
dataWsCallback() (rtCommon.projectServerRPC.RPCHandlers method)
dateStr30() (in module rtCommon.utils)
DebugLevels (class in rtCommon.utils)
debugLog() (rtCommon.webDisplayInterface.WebDisplayInterface method)
decodeByteTypeArgs() (in module rtCommon.serialization)
decodeMessageData() (in module rtCommon.serialization)
DEFAULT_DATASET_DESC (in module rtCommon.bidsCommon)
DEFAULT_EVENTS_HEADERS (in module rtCommon.bidsCommon)
DEFAULT_README (in module rtCommon.bidsCommon)
defaultAllowedDirs (in module rtCommon.scannerDataService)
defaultAllowedTypes (in module rtCommon.scannerDataService)
defaultRpcTimeout (in module rtCommon.remoteable)
defaultWebsocketCallback() (in module rtCommon.webSocketHandlers)
deleteFilesFromList() (in module rtCommon.utils)
deleteFolder() (in module rtCommon.utils)
deleteFolderFiles() (in module rtCommon.utils)
demoDelay() (in module rtCommon.utils)
dequeueResult() (rtCommon.subjectInterface.SubjectInterface method)
DESCRIPTION (rtCommon.bidsCommon.BidsEntityKeys attribute)
dicomTimeToNextTr() (in module rtCommon.imageHandling)
dicomToBidsInc() (in module rtCommon.dicomToBidsService)
DicomToBidsStream (class in rtCommon.bidsInterface)
DimensionError
dirExistsInArchive() (rtCommon.bidsArchive.BidsArchive method)
doRequest() (rtCommon.webSocketHandlers.RequestHandler method)
downloadData() (rtCommon.openNeuro.OpenNeuroCache method)
downloadFilesFromCloud() (in module rtCommon.dataInterface)
downloadFilesFromList() (in module rtCommon.dataInterface)
downloadFolderFromCloud() (in module rtCommon.dataInterface)
dtimeToSeconds() (in module rtCommon.utils)
E
echo() (rtCommon.exampleInterface.ExampleInterface method)
encodeByteTypeArgs() (in module rtCommon.serialization)
encodeMessageData() (in module rtCommon.serialization)
ENTITIES (rtCommon.bidsIncremental.BidsIncremental attribute)
ENTITY (rtCommon.bidsCommon.BidsEntityKeys attribute)
EVENTS (rtCommon.bidsCommon.BidsFileExtension attribute)
ExampleInterface (class in rtCommon.exampleInterface)
ExampleService (class in rtCommon.exampleService)
exposed_BidsInterface (rtCommon.projectServerRPC.ProjectRPCService attribute)
exposed_DataInterface (rtCommon.projectServerRPC.ProjectRPCService attribute)
exposed_ExampleInterface (rtCommon.projectServerRPC.ProjectRPCService attribute)
exposed_isDataRemote() (rtCommon.projectServerRPC.ProjectRPCService method)
exposed_isSubjectRemote() (rtCommon.projectServerRPC.ProjectRPCService method)
exposed_SubjectInterface (rtCommon.projectServerRPC.ProjectRPCService attribute)
exposed_WebDisplayInterface (rtCommon.projectServerRPC.ProjectRPCService attribute)
F
failIfEmpty() (in module rtCommon.bidsArchive)
fields() (rtCommon.structDict.MatlabStructDict method)
fileCount() (in module rtCommon.utils)
FileNotifyHandler (class in rtCommon.fileWatcher)
FileWatcher (class in rtCommon.fileWatcher)
filterEntities() (in module rtCommon.bidsCommon)
find() (in module rtCommon.utils)
findMissingImageMetadata() (rtCommon.bidsIncremental.BidsIncremental class method)
findNewestFile() (in module rtCommon.utils)
flatten_1Ds() (in module rtCommon.utils)
FORMAT (rtCommon.bidsCommon.BidsEntityKeys attribute)
formatFileData() (in module rtCommon.projectUtils)
G
generateDataParts() (in module rtCommon.serialization)
get() (rtCommon.webHttpHandlers.HttpHandler method)
(rtCommon.webHttpHandlers.LoginHandler method)
(rtCommon.webHttpHandlers.LogoutHandler method)
get_current_user() (rtCommon.webHttpHandlers.HttpHandler method)
get_response() (rtCommon.webSocketHandlers.RequestHandler method)
getAcquisitionTime() (rtCommon.bidsIncremental.BidsIncremental method)
getAllowedFileTypes() (rtCommon.dataInterface.DataInterface method)
getAllResponses() (rtCommon.subjectInterface.SubjectInterface method)
getArchivePath() (rtCommon.openNeuro.OpenNeuroCache method)
getAxesForTransform() (in module rtCommon.imageHandling)
getBidsRun() (rtCommon.bidsArchive.BidsArchive method)
getCachePath() (rtCommon.openNeuro.OpenNeuroCache method)
getClockSkew() (rtCommon.bidsInterface.BidsInterface method)
(rtCommon.dataInterface.DataInterface method)
getCookieSecret() (in module rtCommon.webServer)
getDataDirPath() (rtCommon.bidsIncremental.BidsIncremental method)
getDatasetList() (rtCommon.openNeuro.OpenNeuroCache method)
getDatasetName() (rtCommon.bidsIncremental.BidsIncremental method)
getDatatype() (rtCommon.bidsIncremental.BidsIncremental method)
getDescription() (rtCommon.openNeuro.OpenNeuroCache method)
getDicomAcquisitionTime() (in module rtCommon.imageHandling)
getDicomFileName() (in module rtCommon.imageHandling)
getDicomMetadata() (in module rtCommon.bidsCommon)
getDicomRepetitionTime() (in module rtCommon.imageHandling)
getEntities() (rtCommon.bidsIncremental.BidsIncremental method)
getEvents() (rtCommon.bidsArchive.BidsArchive method)
getEventsFileName() (rtCommon.bidsIncremental.BidsIncremental method)
getEventsFilePath() (rtCommon.bidsIncremental.BidsIncremental method)
getFile() (rtCommon.dataInterface.DataInterface method)
getGitCodeId() (in module rtCommon.utils)
getImageData() (rtCommon.bidsIncremental.BidsIncremental method)
(rtCommon.dataInterface.DataInterface method)
getImageDimensions() (rtCommon.bidsIncremental.BidsIncremental method)
getImageFileName() (rtCommon.bidsIncremental.BidsIncremental method)
getImageFilePath() (rtCommon.bidsIncremental.BidsIncremental method)
getImageHeader() (rtCommon.bidsIncremental.BidsIncremental method)
getImageMetadata() (rtCommon.bidsIncremental.BidsIncremental method)
getImages() (rtCommon.bidsArchive.BidsArchive method)
getIncremental() (rtCommon.bidsInterface.BidsInterface method)
(rtCommon.bidsInterface.BidsStream method)
(rtCommon.bidsInterface.DicomToBidsStream method)
(rtCommon.bidsRun.BidsRun method)
getMetadataField() (rtCommon.bidsIncremental.BidsIncremental method)
getMetadataFileName() (rtCommon.bidsIncremental.BidsIncremental method)
getMetadataFilePath() (rtCommon.bidsIncremental.BidsIncremental method)
getNewestFile() (rtCommon.dataInterface.DataInterface method)
getNiftiData() (in module rtCommon.bidsCommon)
getNumVolumes() (rtCommon.bidsInterface.BidsInterface method)
(rtCommon.bidsInterface.BidsStream method)
(rtCommon.bidsInterface.DicomToBidsStream method)
getPreviousDataPoints() (rtCommon.webDisplayInterface.WebDisplayInterface method)
getReadme() (rtCommon.bidsArchive.BidsArchive method)
(rtCommon.openNeuro.OpenNeuroCache method)
getRepetitionTime() (rtCommon.bidsIncremental.BidsIncremental method)
getResponse() (rtCommon.subjectInterface.SubjectInterface method)
getRunEntities() (rtCommon.bidsRun.BidsRun method)
getS3Client() (rtCommon.openNeuro.OpenNeuroCache method)
getSidecarMetadata() (rtCommon.bidsArchive.BidsArchive method)
getSslCertFilePath() (in module rtCommon.certsUtils)
getSslKeyFilePath() (in module rtCommon.certsUtils)
getSubjectList() (rtCommon.openNeuro.OpenNeuroCache method)
getSuffix() (rtCommon.bidsIncremental.BidsIncremental method)
getTimeToNextTR() (in module rtCommon.utils)
getTransform() (in module rtCommon.imageHandling)
gitCodeId (in module rtCommon.utils)
H
handle_request() (rtCommon.wsRemoteService.WsRemoteService static method)
handleRPCRequest() (rtCommon.projectServerRPC.RPCHandlers method)
htmlDir (rtCommon.webServer.Web attribute)
HttpHandler (class in rtCommon.webHttpHandlers)
httpPort (rtCommon.webServer.Web attribute)
httpServer (rtCommon.webServer.Web attribute)
I
IMAGE (rtCommon.bidsCommon.BidsFileExtension attribute)
IMAGE_COMPRESSED (rtCommon.bidsCommon.BidsFileExtension attribute)
image_reference (in module rtCommon.resample)
image_to_resample (in module rtCommon.resample)
initBidsStream() (rtCommon.bidsInterface.BidsInterface method)
initDicomBidsStream() (rtCommon.bidsInterface.BidsInterface method)
initFileNotifier() (rtCommon.fileWatcher.FileWatcher method)
(rtCommon.fileWatcher.InotifyFileWatcher method)
(rtCommon.fileWatcher.WatchdogFileWatcher method)
initialize() (rtCommon.webHttpHandlers.HttpHandler method)
(rtCommon.webHttpHandlers.LoginHandler method)
(rtCommon.webHttpHandlers.LogoutHandler method)
(rtCommon.webSocketHandlers.BaseWebSocketHandler method)
(rtCommon.webSocketHandlers.RejectWebSocketHandler method)
initOpenNeuroStream() (rtCommon.bidsInterface.BidsInterface method)
initScannerStream() (rtCommon.dataInterface.DataInterface method)
initStream() (rtCommon.bidsInterface.DicomToBidsStream method)
initWatch() (rtCommon.dataInterface.DataInterface method)
InotifyFileWatcher (class in rtCommon.fileWatcher)
installLoggers() (in module rtCommon.utils)
InvocationError
ioLoopInst (rtCommon.webServer.Web attribute)
isCompleteImageMetadata() (rtCommon.bidsIncremental.BidsIncremental class method)
isDataRemote() (rtCommon.clientInterface.ClientInterface method)
isEmpty() (rtCommon.bidsArchive.BidsArchive method)
isMeanWithinThreshold() (in module rtCommon.validationUtils)
isNativeType() (in module rtCommon.wsRemoteService)
isRunningRemote() (rtCommon.remoteable.RemoteableExtensible method)
isStructuredArray() (in module rtCommon.structDict)
isSubjectRemote() (rtCommon.clientInterface.ClientInterface method)
isUsingProjectServer() (rtCommon.clientInterface.ClientInterface method)
isValidAccessionNumber() (rtCommon.openNeuro.OpenNeuroCache method)
L
L1 (rtCommon.utils.DebugLevels attribute)
L10 (rtCommon.utils.DebugLevels attribute)
L2 (rtCommon.utils.DebugLevels attribute)
L3 (rtCommon.utils.DebugLevels attribute)
L4 (rtCommon.utils.DebugLevels attribute)
L5 (rtCommon.utils.DebugLevels attribute)
L6 (rtCommon.utils.DebugLevels attribute)
L7 (rtCommon.utils.DebugLevels attribute)
L8 (rtCommon.utils.DebugLevels attribute)
L9 (rtCommon.utils.DebugLevels attribute)
listDirs() (rtCommon.dataInterface.DataInterface method)
listFiles() (rtCommon.dataInterface.DataInterface method)
loadBidsEntities() (in module rtCommon.bidsCommon)
loadConfigFile() (in module rtCommon.utils)
loadMatFile() (in module rtCommon.utils)
loadMatFileFromBuffer() (in module rtCommon.utils)
loadPasswdFile() (in module rtCommon.webHttpHandlers)
logger (in module rtCommon.bidsArchive)
(in module rtCommon.bidsCommon)
(in module rtCommon.bidsIncremental)
(in module rtCommon.bidsRun)
(in module rtCommon.webServer)
login() (in module rtCommon.projectUtils)
loginAttempts (rtCommon.webHttpHandlers.LoginHandler attribute)
LoginHandler (class in rtCommon.webHttpHandlers)
loginRetryDelay (rtCommon.webHttpHandlers.LoginHandler attribute)
LogoutHandler (class in rtCommon.webHttpHandlers)
M
main() (in module rtCommon.addLogin)
(in module rtCommon.checkDicomNiftiConversion)
makeBidsFileName() (rtCommon.bidsIncremental.BidsIncremental method)
makeDicomFieldBidsCompatible() (in module rtCommon.bidsCommon)
makeSSLCertFile() (in module rtCommon.projectUtils)
MatlabStructDict (class in rtCommon.structDict)
maxDaysLoginCookieValid (in module rtCommon.webHttpHandlers)
md5SumFile() (in module rtCommon.utils)
MessageError
METADATA (rtCommon.bidsCommon.BidsFileExtension attribute)
metadataAppendCompatible() (in module rtCommon.bidsCommon)
metadataFromProtocolName() (in module rtCommon.bidsCommon)
MetadataMismatchError
MissedDeadlineError
MissedMultipleDeadlines
MissingMetadataError
module
rtCommon
rtCommon.addLogin
rtCommon.bidsArchive
rtCommon.bidsCommon
rtCommon.bidsIncremental
rtCommon.bidsInterface
rtCommon.bidsRun
rtCommon.certsUtils
rtCommon.checkDicomNiftiConversion
rtCommon.clientInterface
rtCommon.dataInterface
rtCommon.dicomToBidsService
rtCommon.errors
rtCommon.exampleInterface
rtCommon.exampleService
rtCommon.fileWatcher
rtCommon.imageHandling
rtCommon.openNeuro
rtCommon.openNeuroService
rtCommon.projectServer
rtCommon.projectServerRPC
rtCommon.projectUtils
rtCommon.remoteable
rtCommon.resample
rtCommon.scannerDataService
rtCommon.serialization
rtCommon.structDict
rtCommon.subjectInterface
rtCommon.subjectService
rtCommon.utils
rtCommon.validationUtils
rtCommon.webDisplayInterface
rtCommon.webHttpHandlers
rtCommon.webServer
rtCommon.webSocketHandlers
rtCommon.wsRemoteService
moduleDir (in module rtCommon.webServer)
multiPartDataCache (in module rtCommon.serialization)
N
niftiHeadersAppendCompatible() (in module rtCommon.bidsCommon)
niftiImagesAppendCompatible() (in module rtCommon.bidsCommon)
niftiToMem() (in module rtCommon.imageHandling)
notifyEventLoop() (rtCommon.fileWatcher.InotifyFileWatcher method)
NotImplementedError
npToPy() (in module rtCommon.serialization)
numIncrementals() (rtCommon.bidsRun.BidsRun method)
numpyAllNumCodes (in module rtCommon.validationUtils)
O
on_clearDataPoints() (rtCommon.webServer.WsBrowserRequestHandler method)
on_close() (rtCommon.webSocketHandlers.BaseWebSocketHandler method)
(rtCommon.webSocketHandlers.DataWebSocketHandler method)
(rtCommon.wsRemoteService.WsRemoteService static method)
on_connect() (rtCommon.projectServerRPC.ProjectRPCService method)
on_created() (rtCommon.fileWatcher.FileNotifyHandler method)
on_disconnect() (rtCommon.projectServerRPC.ProjectRPCService method)
on_error() (rtCommon.wsRemoteService.WsRemoteService static method)
on_getDataPoints() (rtCommon.webServer.WsBrowserRequestHandler method)
on_getDefaultConfig() (rtCommon.webServer.WsBrowserRequestHandler method)
on_getRunStatus() (rtCommon.webServer.WsBrowserRequestHandler method)
on_message() (rtCommon.webSocketHandlers.BaseWebSocketHandler method)
(rtCommon.wsRemoteService.WsRemoteService static method)
on_modified() (rtCommon.fileWatcher.FileNotifyHandler method)
on_runScript() (rtCommon.webServer.WsBrowserRequestHandler method)
on_stop() (rtCommon.webServer.WsBrowserRequestHandler method)
on_uploadFiles() (rtCommon.webServer.WsBrowserRequestHandler method)
open() (rtCommon.webSocketHandlers.BaseWebSocketHandler method)
(rtCommon.webSocketHandlers.RejectWebSocketHandler method)
OpenNeuroCache (class in rtCommon.openNeuro)
OpenNeuroService (class in rtCommon.openNeuroService)
P
parseConnectionArgs() (in module rtCommon.wsRemoteService)
parseDicomVolume() (in module rtCommon.imageHandling)
parseMatlabStruct() (in module rtCommon.utils)
passwordFile (in module rtCommon.addLogin)
pearsons_mean_corr() (in module rtCommon.validationUtils)
ping() (rtCommon.bidsInterface.BidsInterface method)
(rtCommon.dataInterface.DataInterface method)
plotDataPoint() (rtCommon.webDisplayInterface.WebDisplayInterface method)
post() (rtCommon.webHttpHandlers.LoginHandler method)
prepare_request() (rtCommon.webSocketHandlers.RequestHandler method)
processShouldExitThread() (in module rtCommon.projectUtils)
procOutputReader() (in module rtCommon.webServer)
ProjectRPCService (class in rtCommon.projectServerRPC)
ProjectServer (class in rtCommon.projectServer)
pruneCallbacks() (rtCommon.webSocketHandlers.RequestHandler method)
putFile() (rtCommon.dataInterface.DataInterface method)
PYBIDS_PSEUDO_ENTITIES (in module rtCommon.bidsCommon)
Q
QueryError
R
readDicomFromBuffer() (in module rtCommon.imageHandling)
readDicomFromFile() (in module rtCommon.imageHandling)
readFile() (in module rtCommon.utils)
readNifti() (in module rtCommon.imageHandling)
readRetryDicomFromDataInterface() (in module rtCommon.imageHandling)
recurseCreateStructDict() (in module rtCommon.structDict)
recurseSDtoDict() (in module rtCommon.structDict)
registerClassInstance() (rtCommon.remoteable.RemoteHandler method)
registerClassNameInstance() (rtCommon.remoteable.RemoteHandler method)
registerCommFunction() (rtCommon.remoteable.RemoteableExtensible method)
(rtCommon.remoteable.RemoteStub method)
registerDataCommFunction() (rtCommon.projectServerRPC.ProjectRPCService static method)
registerSubjectCommFunction() (rtCommon.projectServerRPC.ProjectRPCService static method)
RejectWebSocketHandler (class in rtCommon.webSocketHandlers)
Remoteable (class in rtCommon.remoteable)
RemoteableExtensible (class in rtCommon.remoteable)
remoteCall() (rtCommon.remoteable.RemoteableExtensible method)
(rtCommon.remoteable.RemoteStub method)
RemoteHandler (class in rtCommon.remoteable)
remoteHandler (rtCommon.wsRemoteService.WsRemoteService attribute)
RemoteStub (class in rtCommon.remoteable)
removeMetadataField() (rtCommon.bidsIncremental.BidsIncremental method)
RequestError
RequestHandler (class in rtCommon.webSocketHandlers)
REQUIRED_IMAGE_METADATA (rtCommon.bidsIncremental.BidsIncremental attribute)
resampled_image (in module rtCommon.resample)
rootDir (in module rtCommon.webServer)
rootPath (in module rtCommon.addLogin)
(in module rtCommon.certsUtils)
(in module rtCommon.exampleService)
(in module rtCommon.openNeuroService)
(in module rtCommon.projectServer)
(in module rtCommon.scannerDataService)
(in module rtCommon.subjectService)
RPCHandlers (class in rtCommon.projectServerRPC)
rtCommon
module
rtCommon.addLogin
module
rtCommon.bidsArchive
module
rtCommon.bidsCommon
module
rtCommon.bidsIncremental
module
rtCommon.bidsInterface
module
rtCommon.bidsRun
module
rtCommon.certsUtils
module
rtCommon.checkDicomNiftiConversion
module
rtCommon.clientInterface
module
rtCommon.dataInterface
module
rtCommon.dicomToBidsService
module
rtCommon.errors
module
rtCommon.exampleInterface
module
rtCommon.exampleService
module
rtCommon.fileWatcher
module
rtCommon.imageHandling
module
rtCommon.openNeuro
module
rtCommon.openNeuroService
module
rtCommon.projectServer
module
rtCommon.projectServerRPC
module
rtCommon.projectUtils
module
rtCommon.remoteable
module
rtCommon.resample
module
rtCommon.scannerDataService
module
rtCommon.serialization
module
rtCommon.structDict
module
rtCommon.subjectInterface
module
rtCommon.subjectService
module
rtCommon.utils
module
rtCommon.validationUtils
module
rtCommon.webDisplayInterface
module
rtCommon.webHttpHandlers
module
rtCommon.webServer
module
rtCommon.webSocketHandlers
module
rtCommon.wsRemoteService
module
RTError
runCmdCheckOutput() (in module rtCommon.utils)
runDetached() (rtCommon.exampleService.ExampleService method)
(rtCommon.openNeuroService.OpenNeuroService method)
(rtCommon.subjectService.SubjectService method)
runForever() (rtCommon.wsRemoteService.WsRemoteService method)
runRemoteCall() (rtCommon.remoteable.RemoteHandler method)
S
saveAsNiftiImage() (in module rtCommon.imageHandling)
ScannerDataService (class in rtCommon.scannerDataService)
send_response() (rtCommon.wsRemoteService.WsRemoteService static method)
sendConfig() (rtCommon.webDisplayInterface.WebDisplayInterface method)
sendConnStatus() (rtCommon.webDisplayInterface.WebDisplayInterface method)
sendPreviousDataPoints() (rtCommon.webDisplayInterface.WebDisplayInterface method)
sendRunStatus() (rtCommon.webDisplayInterface.WebDisplayInterface method)
sendUploadStatus() (rtCommon.webDisplayInterface.WebDisplayInterface method)
sendWebSocketMessage() (in module rtCommon.webSocketHandlers)
sessionLog() (rtCommon.webDisplayInterface.WebDisplayInterface method)
setDebugError() (rtCommon.webDisplayInterface.WebDisplayInterface method)
setError() (rtCommon.projectServerRPC.RPCHandlers method)
setMessage() (rtCommon.subjectInterface.SubjectInterface method)
setMetadataField() (rtCommon.bidsIncremental.BidsIncremental method)
setResult() (rtCommon.subjectInterface.SubjectInterface method)
setResultDict() (rtCommon.subjectInterface.SubjectInterface method)
setRPCTimeout() (rtCommon.remoteable.RemoteableExtensible method)
(rtCommon.remoteable.RemoteStub method)
setUserError() (rtCommon.webDisplayInterface.WebDisplayInterface method)
shouldExit (rtCommon.wsRemoteService.WsRemoteService attribute)
sslCertFile (in module rtCommon.certsUtils)
sslPrivateKey (in module rtCommon.certsUtils)
start() (rtCommon.projectServer.ProjectServer method)
(rtCommon.webServer.Web static method)
started (rtCommon.webServer.Web attribute)
startRPCThread() (in module rtCommon.projectServerRPC)
StateError
StatsEqual (in module rtCommon.validationUtils)
StatsNotEqual (in module rtCommon.validationUtils)
stop() (rtCommon.projectServer.ProjectServer method)
(rtCommon.webServer.Web static method)
(rtCommon.wsRemoteService.WsRemoteService static method)
storePasswdFile() (in module rtCommon.webHttpHandlers)
stringPartialFormat() (in module rtCommon.utils)
StructDict (class in rtCommon.structDict)
structDictType (in module rtCommon.structDict)
StructureMismatchError
SubjectInterface (class in rtCommon.subjectInterface)
subjectRequest() (rtCommon.projectServerRPC.RPCHandlers method)
SubjectService (class in rtCommon.subjectService)
subjectWsCallback() (rtCommon.projectServerRPC.RPCHandlers method)
symmetricDictDifference() (in module rtCommon.bidsCommon)
T
testMethod() (rtCommon.exampleInterface.ExampleInterface method)
testMode (rtCommon.webServer.Web attribute)
timeToNextTr() (rtCommon.bidsIncremental.BidsIncremental method)
trimDictBytes() (in module rtCommon.utils)
tryGetFile() (rtCommon.bidsArchive.BidsArchive method)
U
UNIT_TO_CODE (in module rtCommon.bidsCommon)
unpackDataMessage() (in module rtCommon.serialization)
uploadFilesFromList() (in module rtCommon.dataInterface)
uploadFilesToCloud() (in module rtCommon.dataInterface)
uploadFolderToCloud() (in module rtCommon.dataInterface)
userLog() (rtCommon.webDisplayInterface.WebDisplayInterface method)
V
ValidationError
VersionError
W
waitForFile() (rtCommon.fileWatcher.FileWatcher method)
(rtCommon.fileWatcher.InotifyFileWatcher method)
(rtCommon.fileWatcher.WatchdogFileWatcher method)
WatchdogFileWatcher (class in rtCommon.fileWatcher)
watchFile() (rtCommon.dataInterface.DataInterface method)
watchForExit() (in module rtCommon.projectUtils)
Web (class in rtCommon.webServer)
webDir (rtCommon.webServer.Web attribute)
WebDisplayInterface (class in rtCommon.webDisplayInterface)
webDisplayInterface (rtCommon.webServer.Web attribute)
websocketState (class in rtCommon.webSocketHandlers)
WrapRpycObject (class in rtCommon.clientInterface)
writeDataFrameToEvents() (in module rtCommon.bidsCommon)
writeDicomFile() (in module rtCommon.imageHandling)
writeDicomToBuffer() (in module rtCommon.imageHandling)
writeFile() (in module rtCommon.utils)
writeToDisk() (rtCommon.bidsIncremental.BidsIncremental method)
WsBrowserRequestHandler (class in rtCommon.webServer)
wsCallbacks (rtCommon.webSocketHandlers.websocketState attribute)
wsConnCallback() (rtCommon.webDisplayInterface.WebDisplayInterface method)
wsConnectionLists (rtCommon.webSocketHandlers.websocketState attribute)
wsConnLock (rtCommon.webSocketHandlers.websocketState attribute)
WsRemoteService (class in rtCommon.wsRemoteService)
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